PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463841
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 184aa    MW: 20853.7 Da    PI: 9.464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463841genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-061021141527
                -TTTTT-SS-SSS CS
    zf-CCCH  15 CkyGdrCkFaHgp 27 
                C+yGd+Ck+ H++
  678463841 102 CRYGDSCKYYHPQ 114
                ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004513.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576676.42E-15447No hitNo description
PfamPF062202.4E-11537IPR013085Zinc finger, U1-C type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPS ARRRHLQGIV HQRAKALWYD TLRSSQCTPR NKSVHWADEA  60
QEHPPLGGGV CNRFVRTVPR VCSRRNSRLE TESKPLFPKC SCRYGDSCKY YHPQRNAAHV  120
ISPVMKGSVH NPTSQSPADA FHKDASFPVA FLANQMGTSL RNLPPSLWPP PEGGYPPLPF  180
IDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551848.15e-61zinc finger CCCH domain-containing protein 3
TrEMBLA0A2G9I7N41e-63A0A2G9I7N4_9LAMI; U1 snRNP-specific protein C
STRINGMigut.B00859.1.p4e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-21C3H family protein