PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678463952
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 306aa    MW: 34386.4 Da    PI: 7.7345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678463952genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06119139526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C  f++ G+C  Gd+C FaHg
  678463952 119 VCAEFRK-GQCGKGDTCEFAHG 139
                6999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-4114140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.404115141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4119141IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-5119139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4146177IPR000571Zinc finger, CCCH-type
SMARTSM003562.6149172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATLCAEQKN HHLYLSKKAL REIDIPPRKL LNRHNDSPKG GGGEAHSNLF SKFLPCNNPD  60
DSSDDDSDPY SSDNFRMYEF KVRKCNRSRS HDWTDCPFAH PGEKARRRDP RRFHYSGNVC  120
AEFRKGQCGK GDTCEFAHGV FECWLHPSRY RTEACKDGKN CKRKVCFFAH SSKQLRILPE  180
NPPENIMYSH RGCNCCVYCH SSPTSTLIRG SPPMSPPISP YAAGYKEAMN ELMASFDVMN  240
VNANTFSPEE NQFSPYLAVS PPCSSSRSFG QCGSLFSSDP FGRNAIDGEN SNVGGPDLEW  300
VNDLLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678463952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022868393.11e-105zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA13e-72C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLS8E5761e-116S8E576_9LAMI; Uncharacterized protein
STRINGXP_009789499.13e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.19e-70C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]