PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464325
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 228aa    MW: 25217.4 Da    PI: 10.335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464325genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-211262256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr ++ +gr++AeIrdp++   r r++lg+f+taeeAa+a++aa+++++g+
  678464325 12 RYRGVRKRP-WGRYAAEIRDPRK---RSRVWLGTFDTAEEAARAYDAAALEFRGH 62
               69*******.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-391275IPR001471AP2/ERF domain
PfamPF008472.7E-151262IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-231270IPR016177DNA-binding domain
PROSITE profilePS5103225.2111269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-321269IPR001471AP2/ERF domain
CDDcd000181.09E-181269No hitNo description
PRINTSPR003671.4E-111324IPR001471AP2/ERF domain
PRINTSPR003671.4E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAKDDADRE VRYRGVRKRP WGRYAAEIRD PRKRSRVWLG TFDTAEEAAR AYDAAALEFR  60
GHKAKTNFPL PSETVRSPSQ TSTLDSSSAD MDTRLRGHNP DPAVTVAHPG TFNGYAIFRP  120
QPTVAVVPNG LPIMLFQPVV QPSEYKTDIG APATPNGGAL RKEREKSSLA RRKRIIITID  180
VSFHKKSVRT SCFDAKHGYE DEIGPKLSNE ESREKKEKTG AAMGPPAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2212691472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464325
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100355.17e-46ethylene-responsive transcription factor 4-like
SwissprotQ9LW492e-41ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE25e-55A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000689594e-42(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-24erf domain protein 9