PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464521
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 199aa    MW: 22731.1 Da    PI: 10.3554
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464521genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.72.6e-3591101101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                aCa+Ck++rr+C+++C lapyfp+++p++f nvh+lFG++nv+++l++l ++ e++da+ s++yeAe+r r P+ G++ ++++l++ql+++  +l+ +++
  678464521   9 ACASCKFQRRRCSPSCQLAPYFPSDKPQTFLNVHRLFGVANVTNTLNNLkSKCEKDDAIVSMIYEAEMRRRFPMFGCTIILHRLEWQLAEATRKLQWVQA 108
                7************************************************66677******************************************9998 PP

     DUF260 100 el 101
                +l
  678464521 109 QL 110
                75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4138110IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-349107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MANGGAVPAC ASCKFQRRRC SPSCQLAPYF PSDKPQTFLN VHRLFGVANV TNTLNNLKSK  60
CEKDDAIVSM IYEAEMRRRF PMFGCTIILH RLEWQLAEAT RKLQWVQAQL EMRKKKMINK  120
KAKMAGPRWD HCEIPRLQPI SELTDQKNTD DGGQSSESST HIPTRVPLQR EKGQAFSPRS  180
SPPRWWSPEQ PPGGADHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2651107111LOB family transfactor Ramosa2.1
5ly0_B3e-2651107111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464521
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843049.13e-40LOB domain-containing protein 27-like
RefseqXP_022886739.13e-40LOB domain-containing protein 1-like
TrEMBLA0A2G9GDN94e-40A0A2G9GDN9_9LAMI; Uncharacterized protein
STRINGMigut.K01341.1.p5e-37(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.46e-28LBD family protein