PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465080
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 239aa    MW: 26946.4 Da    PI: 9.7888
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465080genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.85.2e-2948149199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k ltpsdv+k++rlv+pk+ ae+       g  e++  l ++de g++W+++++y+k+s++yvltkGW+++vk+++L+ gD+v F++++ + ++l+++
  678465080  48 FEKSLTPSDVGKLNRLVIPKQQAEKWfpspeAG--EKGLILNFTDEAGKQWRFRYSYWKSSQSYVLTKGWSRYVKEKRLDHGDVVRFSRHRLHIGRLFIG 145
                99*********************9999886433..36679************************************************654488888887 PP

                EE-S CS
         B3  96 vfrk 99 
                  rk
  678465080 146 CTRK 149
                7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-3643148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2943148IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-2746136No hitNo description
PfamPF023621.0E-2548149IPR003340B3 DNA binding domain
SMARTSM010191.3E-2048150IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73348150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSFTFNNLSS VPHYFRWPEY VVDTTWSPTY PLAVDQNPPP EEDALPLFEK SLTPSDVGKL  60
NRLVIPKQQA EKWFPSPEAG EKGLILNFTD EAGKQWRFRY SYWKSSQSYV LTKGWSRYVK  120
EKRLDHGDVV RFSRHRLHIG RLFIGCTRKS FGEGLPPAVG MAYAGHRHFH ASPSPVTFKT  180
NCPNAGGSSK KREEEGETGK LMKLRLFGVN LEWQVGDGSK PSTSDGSAMG SQGLSQQTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-404415010118DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.22e-58PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ23e-52Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A438EK284e-57A0A438EK28_VITVI; B3 domain-containing protein
TrEMBLF6HKN61e-57F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t012e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-51B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]