PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465147
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 244aa    MW: 26816.4 Da    PI: 9.0238
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465147genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.8e-17172208135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  678465147 172 CRHCGISEkfTPMMRRGPEGPRTLCNACGLMWANKGT 208
                ******999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.20872107IPR010399Tify domain
SMARTSM009791.2E-1072107IPR010399Tify domain
PfamPF062002.9E-1275106IPR010399Tify domain
PfamPF062031.3E-9139171IPR010402CCT domain
PROSITE profilePS5101710.09139181IPR010402CCT domain
PROSITE profilePS501148.959166226IPR000679Zinc finger, GATA-type
SMARTSM004018.9E-12166219IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-12168219No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15171213IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.79E-14171214No hitNo description
PfamPF003208.2E-15172208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440172199IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNVIHVNEPG MSNYLEEELH HHISGRNVND GDDGNIGIGG RGTVDDTVDA DAVGELGNQS  60
DTQGSMVPHV AGGDGSNQLT LTFHGQVYVF DSVSPEKVQA VLLLLGGREV PPSIPAAPMS  120
MSSNRVLSNR PQKLNVPQRL ASLIRFREKR KERNFDKKIR YTVRKEAQDA FCRHCGISEK  180
FTPMMRRGPE GPRTLCNACG LMWANKGTLR DLSKTTHLGS TSMHTKPEEV CLNSRKRKLS  240
LSVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465147
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.11e-97GATA transcription factor 28
SwissprotQ8GXL71e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2G9I2N61e-93A0A2G9I2N6_9LAMI; Uncharacterized protein
STRINGMigut.I01184.1.p1e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-65ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]