PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465474
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 419aa    MW: 45402.4 Da    PI: 9.5084
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465474genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.2e-3896155261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                +e+ l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++
  678465474  96 PERVLTCPRCNSVDTKFCYYNNYNTNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSA 155
                678899***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2793153IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3198154IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.463100154IPR003851Zinc finger, Dof-type
PROSITE patternPS013610102138IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MKRGVSAGCP KPLNWWRNVC VLRLGQASLR LSFAFFQLHC SKRRTVWLQE LKGTNLATRL  60
TEDPNGPFAG NSDVQASKTE EQIDPGVSQE KSFRKPERVL TCPRCNSVDT KFCYYNNYNT  120
NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKSAAVGQL RPAVPEALPK VSVEHSTGVH  180
HHPGPNTNAT ALKLSSDAPP LCNVFSRTGE QESCVSLGSK ECGHDPSTGS SIASPNDVIG  240
KRRLQEQVSS CHPFPSWPYP CHSAQWHSLA SAPTFAFGSV PMPSSYSSAT QLMGSKIPSL  300
WTGPWVSPGP WVSPPAPMAP WSGASSMTLG KHSRDDITAN FGEEIPSKNT LEQRLCVPKA  360
SKLGIEEDGA DSVGICSSSL LKSFKGESKN KGALHMKSSS VLQANTAALS MALSFRESS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098639.11e-83cyclic dof factor 2-like
TrEMBLA0A2G9GHS29e-78A0A2G9GHS2_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-48cycling DOF factor 2