PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465621
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 683aa    MW: 74745.6 Da    PI: 6.3945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465621genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.66.9e-16470516455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  678465621 470 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLGEAIEYLKMLQ 516
                5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.37E-17462520No hitNo description
SuperFamilySSF474593.79E-20463525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.746466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13470516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-20470524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-18472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MCRCRLSAGL CETYKAWELS LYSYQPRFVG GEFKEAYSLR PEENEMELMA VSFHGWKRGS  60
FQEKCSWVPA EVRKMPQGEY SRIAGRRHES GNYFPFLNGF SSRVGGDLSE LVWENGQVTV  120
QGQSSKLSRP SLVTSLPSGV PSEPIEGQKI GILHDISPVV PPSELDLCLT NELAPWLDYP  180
FDDGMEQGFG SQRLPEVTAV MEHGISDGNG CELGQSNLDS GEKGPPFSYD PLWPLQNRQA  240
PGGSGSRAQD SISNQTEYLF ENQDQNRDLF SDDRHRRSNS KMVNFPHFSK PNAANLQDPV  300
GIPASGGPNS KNIDTSFHVS AAPEEVSNAM QELAKQVLNE DLPKETDNGN MKLQVQGSET  360
LEKQISCDEL PVEQNVACSS VGSGHGAEVV SSDQTNQCKR KSFDADDSGV HSDDDDIIYV  420
AEKKHAPSGR GSVSRRSEVV EVDTDHVDGK KPTPPRKGTS GSKRSRVAEV HNLSERRRRD  480
RINEKMRALQ ELIPNCNKAD KASMLGEAIE YLKMLQFQVQ FMSMGGGLCM RPVMFPQGIQ  540
PMYHHHHLAP FPPMGVGMSP GFGMGMVDSR SPIFPATLPP MPHIPSPVSG PSSMFRVTGP  600
GLPVYGHPCE GPPAQMNSQH AAVPATGYHN KQPCPPAALN PTNPNTKTSS RSASSAAVSR  660
RSRQVEAMNQ STTTQDVNAV HSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474479ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465621
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-40phytochrome interacting factor 3