PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465640
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 256aa    MW: 28110 Da    PI: 8.854
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465640genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.25.9e-201868151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i +  +rqvtf+kR +g++KKA E SvLC++ + ++  s+ gkl+++ss
  678465640 18 KKIVDRARRQVTFTKRHQGLFKKAAECSVLCGVGITILAKSPGGKLFTFSS 68
               5788999******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-231069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.3571070IPR002100Transcription factor, MADS-box
CDDcd001202.37E-231168No hitNo description
SuperFamilySSF554552.75E-201173IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-161232IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171966IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MESGVPKKTG GRRKIQMKKI VDRARRQVTF TKRHQGLFKK AAECSVLCGV GITILAKSPG  60
GKLFTFSSAT PPRHPVFRSI FGRVKPSCIE NRVAHAASAQ NIESRKAKNN ITEGPRWWER  120
NINDIHDLQE LQEFTATLVD FKNRVSAQIQ KSNAACPSPP PLVAAEMAPS ATPWTIMDDL  180
LMDDFNSTVC WDPIQTNSSD ICHSDPATSA SLQTNASDPE MLNLDDLELV VRTHYISISS  240
TSNLLANPFG FSGTAA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.19e-17M-type_MADS family protein