PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678466052

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

ERF

Protein Properties

Length: 252aa MW: 27736.9 Da PI: 5.9077

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466052	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.3	1e-09	84	110	27	53
AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53 ++r++lg+f taeeAa+a+++a+ + 678466052 84 LKRRVWLGTFETAEEAARAYDEAAVLM 110 569********************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.422	59	120	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-18	59	126	IPR001471	AP2/ERF domain
CDD	cd00018	6.20E-20	60	121	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.7E-19	62	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-12	75	121	IPR016177	DNA-binding domain
Pfam	PF00847	9.6E-6	84	107	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
SEKGWYNDLV APWDYKTMGW EEAVRHLLQS GNRILGRSPS LEENGPEQEV QRGPTTPLGF 60 LGVRDSPPIA VNVQYSSLLR DRMLKRRVWL GTFETAEEAA RAYDEAAVLM SGRNAKTNFP 120 VPENVGNACS GYVSSSSSRP SSLSSILGAK LRKCCRSPSL TCLRLDTENS HIGVWQKRAG 180 STSDSNWVMT VELGEKQSTE NTSLSTAAAV PSNPSPNNSD SSSTVPPMQT REGIKEEERI 240 ALQMIEEFLN RN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	DRMLKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15070782, ECO:0000269\|PubMed:15319479}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466052

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475843.1	8e-63	ethylene-responsive transcription factor WIN1
Refseq	XP_022845341.1	6e-63	ethylene-responsive transcription factor WIN1-like
Refseq	XP_022845391.1	6e-63	ethylene-responsive transcription factor WIN1-like
Refseq	XP_022845453.1	6e-63	ethylene-responsive transcription factor WIN1-like
Swissprot	Q9XI33	3e-52	WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBL	S8CLD5	1e-65	S8CLD5_9LAMI; Uncharacterized protein
STRING	XP_006475843.1	3e-62	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1352	24	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15360.1	2e-39	ERF family protein

Publications ? help Back to Top
Taketa S, et al. Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7 [PMID:18316719] Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato. Int J Mol Sci, 2014. 15(11): p. 19499-515 [PMID:25350113] Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486] Sajeevan RS, et al. Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss. Front Plant Sci, 2017. 8: p. 418 [PMID:28421085]