PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678466087

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HB-other

Protein Properties

Length: 500aa MW: 56605.6 Da PI: 8.6663

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466087	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	22	77	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ ql++Le++F++++yp+++ + + A+ +gLte+qV+ WF+ rR k+kk 678466087 22 RKRMVKTAAQLQALEKFFNEHKYPTEALKMQFAEAVGLTEKQVSGWFCHRRLKDKK 77 89****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-20	6	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-18	14	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	18	78	IPR001356	Homeobox domain
SMART	SM00389	3.4E-17	20	82	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	22	77	IPR001356	Homeobox domain
CDD	cd00086	6.10E-15	22	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MGDESSEMHS EDDRGFVEKK HRKRMVKTAA QLQALEKFFN EHKYPTEALK MQFAEAVGLT 60 EKQVSGWFCH RRLKDKKLMS GGYNHTGKQE RSSGVIQDRG SGHKQDSCGS TKQGDDRNFD 120 TKEVESGRLM SKDYSAVDLA NEHDNPCPGK YDSEDDTNSG SSSPLRDTSN HRSRGPFENE 180 RSMHLVPKLE HERRTNARSG PSGYLKLKGR VENPAITAVK RQLGKHYRDE GPPLSVEFDP 240 PPPGAFENPT RERYYCREAD HPALSDASKV TQNLKFDEGR DFEPSVASFN NLVDGPSFKA 300 RQEFCSPSSY TQPNFGQRSP SRNSGAYYPH QASSVNQYEG LTRNIQQTRL WPDHLPYGGE 360 KPAESWFNKF TAAGLMPSRR ESIKNEYFGS TTTWEMNSVN NGLSRPLHNG FSQQIFKPPK 420 RMSEELVRQR QRSSPALDNL PRTSGKYTSD LLPTPEPDCY SVSRFLVGFK SQNPNGVFKC 480 PWLPNAACSR EWNHSSTEIQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MGDESSEMHS EDDRGFVEKK HRKRMVKTAA QLQALEKFFN EHKYPTEALK MQFAEAVGLT  60
EKQVSGWFCH RRLKDKKLMS GGYNHTGKQE RSSGVIQDRG SGHKQDSCGS TKQGDDRNFD  120
TKEVESGRLM SKDYSAVDLA NEHDNPCPGK YDSEDDTNSG SSSPLRDTSN HRSRGPFENE  180
RSMHLVPKLE HERRTNARSG PSGYLKLKGR VENPAITAVK RQLGKHYRDE GPPLSVEFDP  240
PPPGAFENPT RERYYCREAD HPALSDASKV TQNLKFDEGR DFEPSVASFN NLVDGPSFKA  300
RQEFCSPSSY TQPNFGQRSP SRNSGAYYPH QASSVNQYEG LTRNIQQTRL WPDHLPYGGE  360
KPAESWFNKF TAAGLMPSRR ESIKNEYFGS TTTWEMNSVN NGLSRPLHNG FSQQIFKPPK  420
RMSEELVRQR QRSSPALDNL PRTSGKYTSD LLPTPEPDCY SVSRFLVGFK SQNPNGVFKC  480
PWLPNAACSR EWNHSSTEIQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466087

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	1e-121	uncharacterized protein LOC105163662 isoform X3
TrEMBL	A0A2G9H8Q2	1e-128	A0A2G9H8Q2_9LAMI; Uncharacterized protein
STRING	Migut.N02368.1.p	1e-110	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-61	HB-other family protein