PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466656
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 235aa    MW: 25818.9 Da    PI: 9.5771
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466656genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.22.8e-363690660
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
               + cprC+s +tkfCyynnys +qPry+Ck+CrryWt+GG+lrnvPvGgg+rk+k+
  678466656 36 QICPRCNSGDTKFCYYNNYSQAQPRYYCKTCRRYWTHGGSLRNVPVGGGSRKSKR 90
               57***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-183281IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.9973690IPR003851Zinc finger, Dof-type
PfamPF027012.2E-313790IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDSGKASTTV ERGRMERQTA GMFRETRHNH PPPLPQICPR CNSGDTKFCY YNNYSQAQPR  60
YYCKTCRRYW THGGSLRNVP VGGGSRKSKR GKGMTECEIP ASSTGLLPVG PSIRRLPTMA  120
PAVGNSFLSG GTHMPSLMSQ PVKFLYGQNM SFLQSTNLCF RNTQAPQYQT PAMDRSFQPG  180
HYSSWAHDGF MHLDLASAGA TASAGCHPGV GTNHASSSFI ANQWPDSDHG FNPQY
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096324.25e-36dof zinc finger protein DOF3.1
STRINGXP_010277571.11e-28(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-25Dof-type zinc finger domain-containing protein