PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678466662

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 354aa MW: 38926.8 Da PI: 8.646

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466662	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl 678466662 36 KPRLRWTVELHERFVEAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-32	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.694	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	1.04E-16	35	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-24	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-8	38	88	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-25	128	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MFHGSQKKPS TAGVNSHDRA MCVQGDAGLV LTTDPKPRLR WTVELHERFV EAVTQLGGPD 60 KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQPHKDYSD HSMKDELHRS NVASAGMLGH 120 SMNDGSNVHI SDAIRMQMEV NRRLHEQLEV QRHLQLRIEA QGKYMQTILE KACQTLAGEN 180 IATAAAVSGG YNRTPMGADI HGVKDFDPDM SYATMQDLNI YLSSDPLDQL QPHHQQILNV 240 DSFLAGNEPP RKKRPNPYSE SHSASAGKSP FIWADDLRLQ EAGTAPSASS IDENRRIQMT 300 GGEIDSASDI YDSKPIGGGD QKKFEGSGKI ERPSPRRTVI STGGQAAGRN SPFG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MFHGSQKKPS TAGVNSHDRA MCVQGDAGLV LTTDPKPRLR WTVELHERFV EAVTQLGGPD  60
KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQPHKDYSD HSMKDELHRS NVASAGMLGH  120
SMNDGSNVHI SDAIRMQMEV NRRLHEQLEV QRHLQLRIEA QGKYMQTILE KACQTLAGEN  180
IATAAAVSGG YNRTPMGADI HGVKDFDPDM SYATMQDLNI YLSSDPLDQL QPHHQQILNV  240
DSFLAGNEPP RKKRPNPYSE SHSASAGKSP FIWADDLRLQ EAGTAPSASS IDENRRIQMT  300
GGEIDSASDI YDSKPIGGGD QKKFEGSGKI ERPSPRRTVI STGGQAAGRN SPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466662

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095765.1	1e-163	myb family transcription factor APL isoform X2
Swissprot	Q9SAK5	1e-110	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2G9G9Z5	1e-146	A0A2G9G9Z5_9LAMI; Uncharacterized protein
STRING	Gorai.013G146200.1	1e-139	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7942	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-112	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]