PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466665
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 186aa    MW: 20580 Da    PI: 5.3331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466665genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-162373155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr +  +g++v eIr+p+    + +r++lg++ tae+Aa+a++ a+++++g
  678466665 23 KKYRGVRKRA-WGKYVTEIREPK----KpTRIWLGTYATAEMAARAHDVAALAIKG 73
               59*****887.**********83....58***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.75E-322383No hitNo description
PfamPF008476.0E-112473IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-192482IPR016177DNA-binding domain
SMARTSM003806.1E-342487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-302482IPR001471AP2/ERF domain
PROSITE profilePS5103222.3922481IPR001471AP2/ERF domain
PRINTSPR003674.2E-102536IPR001471AP2/ERF domain
PRINTSPR003674.2E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MENHERAIAF APVHGAEEDS GEKKYRGVRK RAWGKYVTEI REPKKPTRIW LGTYATAEMA  60
ARAHDVAALA IKGRSAHLNF PELAELLPRP ASKSHKDIQA AAMKAAAFCE APEPIVIPHP  120
VESGSTQESS SRFGSVDGGD DDPIFDLPEL PNDSPSYSDW DSYLRYIWRV SEVSSGSPFE  180
YPIDLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1724811472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337619.13e-42ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP35e-37ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A371HXZ53e-41A0A371HXZ5_MUCPR; Ethylene-responsive transcription factor ERF034 (Fragment)
STRINGEMJ199984e-41(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.17e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]