PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678466846

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

FAR1

Protein Properties

Length: 821aa MW: 94426.2 Da PI: 7.1905

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466846	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.8	7.8e-28	64	151	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++++ ++r++++++t+Cka+++vk+++dg w+++++ +eHnHel p 678466846 64 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGMTPESETS---SSRRSSVKKTDCKASMHVKRKRDGGWYIHEFIKEHNHELLP 151 5*************************************9998877...889999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-25	64	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.9E-20	272	364	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MVGCEGNAKC GRGDALNVID AVDSVQSRDD PLNTCPKTDV SGIEGSRFEP DEGIDFESHE 60 AAYSFYQEYA KSMGFTTSIK NSRRSKKTKE FIDAKFACSR YGMTPESETS SSRRSSVKKT 120 DCKASMHVKR KRDGGWYIHE FIKEHNHELL PALAYHFHIH RNVRLAEKNN IDILHAVSER 180 TRKMYVEMCR QYGGIHEPSF SKNEVDHQAD GARCMALDEG DARFMMDTFM QLQKESPYFS 240 YAVELNREQR VRNLFWIDSK SRKDYIFFSD AVFLDTTFVK SSDKVPIALF LGVNHHFQPM 300 LLGCALLADE SKSTFVWLLK TWLRAVGGKA PNLILSCQDT QLKLAIEEIF PCSRHCFPLW 360 HVMEKIPVTL GHVLRLHVNF IKKFNKCISR SLTDEEFDMR WWKMVTRFEL QENEWVHSLY 420 VERKKWAPIF MRDAFLAGLS PRQRSDSVNS FFDKYIHKKM NVNEFMRQYI VILQNRSEEE 480 DLADFDMLHR QPALKSPSPW EKQMSTIYTH SIFRKFQVEV LGVVGCHPKK EREDGVNVTF 540 KVDDCEKGEN FVVMWNEEMS ELCGLSRIPS QYILKRWTKD AKVRQGDLEE TDSAHTRVQR 600 YNDLCKIAIA LGEEGSSCEE NYNIACRALV QALKNCVNVN NRTAVDSSSN SVGLRFSEQE 660 TLLLHGNKSS KKKNSGKKRK QEPEPIVNET EDNIEPLETL SSQEMTLNGY YGSQQNVHGM 720 LNLMEPPQDG YYVSQPTLPG MVRRSACGVA CALMFHVTCF IKDECHYSQL NSIPSGHDSF 780 YGAQQNLPAL GHLDFRQATF PYIMQGDHSV RQPELQEGAR N

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MVGCEGNAKC GRGDALNVID AVDSVQSRDD PLNTCPKTDV SGIEGSRFEP DEGIDFESHE  60
AAYSFYQEYA KSMGFTTSIK NSRRSKKTKE FIDAKFACSR YGMTPESETS SSRRSSVKKT  120
DCKASMHVKR KRDGGWYIHE FIKEHNHELL PALAYHFHIH RNVRLAEKNN IDILHAVSER  180
TRKMYVEMCR QYGGIHEPSF SKNEVDHQAD GARCMALDEG DARFMMDTFM QLQKESPYFS  240
YAVELNREQR VRNLFWIDSK SRKDYIFFSD AVFLDTTFVK SSDKVPIALF LGVNHHFQPM  300
LLGCALLADE SKSTFVWLLK TWLRAVGGKA PNLILSCQDT QLKLAIEEIF PCSRHCFPLW  360
HVMEKIPVTL GHVLRLHVNF IKKFNKCISR SLTDEEFDMR WWKMVTRFEL QENEWVHSLY  420
VERKKWAPIF MRDAFLAGLS PRQRSDSVNS FFDKYIHKKM NVNEFMRQYI VILQNRSEEE  480
DLADFDMLHR QPALKSPSPW EKQMSTIYTH SIFRKFQVEV LGVVGCHPKK EREDGVNVTF  540
KVDDCEKGEN FVVMWNEEMS ELCGLSRIPS QYILKRWTKD AKVRQGDLEE TDSAHTRVQR  600
YNDLCKIAIA LGEEGSSCEE NYNIACRALV QALKNCVNVN NRTAVDSSSN SVGLRFSEQE  660
TLLLHGNKSS KKKNSGKKRK QEPEPIVNET EDNIEPLETL SSQEMTLNGY YGSQQNVHGM  720
LNLMEPPQDG YYVSQPTLPG MVRRSACGVA CALMFHVTCF IKDECHYSQL NSIPSGHDSF  780
YGAQQNLPAL GHLDFRQATF PYIMQGDHSV RQPELQEGAR N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466846

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085456.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_011085457.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A022RW20	0.0	A0A022RW20_ERYGU; Uncharacterized protein
STRING	Migut.H01263.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]