PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678467096

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 181aa MW: 19768.6 Da PI: 9.3648

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678467096	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	71.5	1.7e-22	18	118	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+ lr++Ca++Cvl+ + p++q++++ +++k++G++ +++ll ++p e+r+++ +sl+ eA+ r+ +Pv G++g++ +++ + ++ +++++ 678467096 18 SCNGCRALRKACAESCVLRDALqsidsPEAQANATLFLAKFYGRTGLVNLLGQAPAEHRPQVCRSLLSEACGRVINPVDGSFGLYASGEGRRCEDAVQAV 117 6*******************9999999******************************************************999988888777766 PP DUF260 96 l 96 l 678467096 118 L 118 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.632	17	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-19	18	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
LKFPKPQCPP SLQYYEMSCN GCRALRKACA ESCVLRDALQ SIDSPEAQAN ATLFLAKFYG 60 RTGLVNLLGQ APAEHRPQVC RSLLSEACGR VINPVDGSFG LYASGEGRRC EDAVQAVLDG 120 TPLLKRVTED GKSEWQFPVL PLVGSEIRRY TSSPSSGKKL QRRRVKNDAS SVRRAVLPRD 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678467096

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070804.1	4e-48	LOB domain-containing protein 40-like
Swissprot	Q9M886	1e-42	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9HYG4	1e-48	A0A2G9HYG4_9LAMI; Uncharacterized protein
STRING	Solyc05g009320.2.1	8e-47	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-45	LOB domain-containing protein 41