PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467179
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 229aa    MW: 25259.1 Da    PI: 8.7208
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467179genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260773.3e-242105198
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C+++C+l+  +      ++q++++++++k++G+s +++ll+ +  + +r+++ +sl+yeA+ r+  P+yG+vg++ ++++q +++++e 
  678467179   2 SCNGCRVLRKACPQSCALRDSLkwiqsDEAQANATRFLAKFYGRSGLINLLAGAgTRADRRQISQSLLYEACGRIISPIYGSVGLFADGKWQRCRSAVES 101
                6*********************9987666789*******************99846666*************************************9998 PP

     DUF260  95 allk 98 
                +l +
  678467179 102 VLNG 105
                8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.4521108IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-202101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSCNGCRVLR KACPQSCALR DSLKWIQSDE AQANATRFLA KFYGRSGLIN LLAGAGTRAD  60
RRQISQSLLY EACGRIISPI YGSVGLFADG KWQRCRSAVE SVLNGTPLLK VITVEGETEK  120
ELAVSPTQAC EIRHVSKESI VDRHIRTRKR ARKDTSMSQS ELHQLLSVVN LPVPQEKFTL  180
TGWDCKEMNR SKPFPVETTP PGVEVSPHCG GSIELELTLG PSHLLLHCS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.15e-62LOB domain-containing protein 40-like
SwissprotQ9ZW963e-44LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A022QR012e-58A0A022QR01_ERYGU; Uncharacterized protein
STRINGMigut.E00341.1.p3e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-46LOB domain-containing protein 40