PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467445
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 335aa    MW: 37022.4 Da    PI: 7.7883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467445genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-112753127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C++f+rtGtC yG +C+F+H++
  678467445 27 PGEPDCKHFLRTGTCDYGRNCRFNHPR 53
               5789*********************96 PP
2zf-CCCH19.61.6e-061061191427
                --TTTTT-SS-SSS CS
    zf-CCCH  14 tCkyGdrCkFaHgp 27 
                tCkyG++Ck++H++
  678467445 106 TCKYGSSCKYNHPK 119
                8***********96 PP
3zf-CCCH314.2e-10139162427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C+f++r+G C yG  CkF+H++
  678467445 139 KPCPFYMRMGVCGYGHACKFHHPQ 162
                69********************97 PP
4zf-CCCH28.62.4e-09235260126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++Cr+f   GtC+yG++C+++H+
  678467445 235 PGRPECRYFISHGTCRYGSNCRYNHP 260
                689**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-52653IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5542654IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-82853IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-73156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-63254IPR000571Zinc finger, CCCH-type
SMARTSM003568.597119IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.545106120IPR000571Zinc finger, CCCH-type
PfamPF146080.63106118No hitNo description
SuperFamilySSF902297.33E-7134163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314135163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026135162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4139161IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8139162IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619234262IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-7235260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6238263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4240260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
AVGRLSTNDT ADGSQLRCAS SMYPERPGEP DCKHFLRTGT CDYGRNCRFN HPRDALYVNN  60
FILFTLDSAD DFSDWFFLIC PMINRIMALP TLSSSQKESE NQIVSTCKYG SSCKYNHPKG  120
KQADVWMNIL GLPMRQDAKP CPFYMRMGVC GYGHACKFHH PQPSPPPVFF PVLGPPATFS  180
SSPYLIGSSL QPWQSYPPAF IYSPQDWPLY MGNAWPASAS HVVTAPPSYD FPQRPGRPEC  240
RYFISHGTCR YGSNCRYNHP AGRISQVASI PVAPPRLPSG PRRESSSSPS SEPPQAKPTA  300
VNDDEPPKEN TPGGSPDRSD SFPHSCAASN QNDSD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467445
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.14e-39zinc finger nuclease 2