PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467655
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 271aa    MW: 30545.2 Da    PI: 5.6097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467655genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + ++++g++R++k+c++rw++yl
        678467655 14 KGPWSPEEDAKLKEHIEKYGTGgNWIALPAKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.11.5e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        678467655  69 GGFTEEEDGIISSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.291966IPR017930Myb domain
SuperFamilySSF466898.77E-2711109IPR009057Homeodomain-like
SMARTSM007172.5E-131364IPR001005SANT/Myb domain
PfamPF002491.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001672.29E-101662No hitNo description
PROSITE profilePS5129415.88267117IPR017930Myb domain
SMARTSM007171.4E-967115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2269117IPR009057Homeodomain-like
PfamPF002496.9E-1069111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRAPCCDKD NVKKGPWSPE EDAKLKEHIE KYGTGGNWIA LPAKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDGIIS SLYISIGSRW SIIAAQLPGR TDNDVKNYWN TRLKKKLLGQ  120
RRQASVSTNG GVGGEEDNSS LSNSAMERLQ LHMQLQSNDP LPMCDWPKPK PMLPKFYGHD  180
QFKDPTPHNL PNVDDQPNPG FIQSDIHDLL DYSFGSTEMV MPGNDRIDET DGSNEELGYW  240
SAELGTNCSF LDSHSVHQSD EIFLMEYGMQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467655
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022731077.17e-93transcription factor MYB36-like
SwissprotQ9FKL23e-86MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2H5P7S38e-92A0A2H5P7S3_CITUN; Uncharacterized protein
STRINGXP_006474624.16e-92(Citrus sinensis)
STRINGXP_006453430.16e-92(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-80myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]