PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467900
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 252aa    MW: 28100.3 Da    PI: 9.227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467900genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.92.3e-2935138199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                f+kv tpsdv+k++rlv+pk++a+++         + ++  l++ed  g++W+++++y+ +s++yv+tkGW++Fvk++gL++gD+v F +  + +++e +
  678467900  35 FDKVVTPSDVGKLNRLVIPKQHAQKYfpldvsT--SDKGHLLSFEDGCGKKWRFRYSYWSSSQSYVMTKGWNRFVKEKGLDAGDVVSFGRGVDeMGKEIL 132
                89**************************99643..446779************************************************77555888877 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                +  +r+
  678467900 133 FIGCRR 138
                777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-3929144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2930133IPR015300DNA-binding pseudobarrel domain
CDDcd100178.64E-1933120No hitNo description
PfamPF023621.8E-2635138IPR003340B3 DNA binding domain
SMARTSM010192.0E-2035139IPR003340B3 DNA binding domain
PROSITE profilePS5086314.25435138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPSPSSSPPQ LSDNRVADTQ LRSGGGVVSS REHMFDKVVT PSDVGKLNRL VIPKQHAQKY  60
FPLDVSTSDK GHLLSFEDGC GKKWRFRYSY WSSSQSYVMT KGWNRFVKEK GLDAGDVVSF  120
GRGVDEMGKE ILFIGCRRRA SEPQMPVYTF SLSPMLRPWS PLVLHQPWMF TNSGVLCGPS  180
GMQPVVLNSV PLVQREAAVK KRVRLFGVDF ECPLPEPCPT LPLLHQLPSP GSDSVRFDLW  240
KGKDSISSDV DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-52281391113B3 domain-containing transcription factor NGA1
5os9_B1e-52281391113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391640.13e-65PREDICTED: B3 domain-containing protein Os03g0120900-like
RefseqXP_012439872.17e-65PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_012439873.17e-65PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827996e-56NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ9M2684e-56NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A068UVI63e-67A0A068UVI6_COFCA; Uncharacterized protein
STRINGGorai.008G261100.13e-64(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.15e-56B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]