PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678468133

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 165aa MW: 17918.3 Da PI: 9.4985

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678468133	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	76	6.7e-24	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++ Cvl+ + p++q++++++++k++G++ +++ll+++p+e r+++ +sl+ eA+ r+ +Pv G+vg++ +++ + ++ +++++ 678468133 2 SCNGCRVLRKACTERCVLRDALqliesPEAQANATRFLAKFYGRTGLVNLLSQAPTESRSEVCRSLLSEACGRVINPVDGSVGLYASGEGRRCEDAVQAV 101 6************************************************************************************999988888777766 PP DUF260 96 l 96 l 678468133 102 L 102 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.377	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-20	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MSCNGCRVLR KACTERCVLR DALQLIESPE AQANATRFLA KFYGRTGLVN LLSQAPTESR 60 SEVCRSLLSE ACGRVINPVD GSVGLYASGE GRRCEDAVQA VLDGTPLLKR VTEDGKSEWQ 120 FPVLPLFGSE TRRHKSSSGS RNKTLRRRVK GDASSSISPQ SSSPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678468133

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070804.1	3e-51	LOB domain-containing protein 40-like
Swissprot	Q9M886	4e-44	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9HYG4	4e-50	A0A2G9HYG4_9LAMI; Uncharacterized protein
STRING	Solyc05g009320.2.1	1e-45	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-46	LOB domain-containing protein 41