PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468225
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 248aa    MW: 27849.3 Da    PI: 7.477
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468225genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.34e-3230110278
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s++     ++++
  678468225  30 FGGKDRHSKVCTVRGLRDRRVRLSVQTAIQVYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLQMPQGSSTyfrsLDHHH 110
                689*************************************************************77666555443322222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.6863290IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-2932111IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTSCGEGKPS AMPSWAMLKD PRIVRVSRAF GGKDRHSKVC TVRGLRDRRV RLSVQTAIQV  60
YDLQDRLGLS QPSKVVDWLL NAAKHEIDEL PPLQMPQGSS TYFRSLDHHH EAIGSGPNLN  120
PDLEKLKEMA PGFNPFERWD PSSLTLSHPP RSFDFPSEHH QDLHEIGVMQ WTSAHVYQHG  180
GPWLPSPPFD SKPLNLQVGS QISNVSLASS VDSGARTVRP FNFNMTADLL HFHNKIEDER  240
HTNGYCSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-193791155Putative transcription factor PCF6
5zkt_B9e-193791155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064545.13e-59transcription factor TCP17 isoform X1
SwissprotQ9LEZ98e-42TCP17_ARATH; Transcription factor TCP17
TrEMBLG3BGU53e-57G3BGU5_SOLLC; TCP transcription factor 5
STRINGSolyc02g089020.1.14e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.13e-44TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]