PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468405
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 169aa    MW: 18281.5 Da    PI: 7.9321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468405genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135173123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ykC+ C+k Fs+   L  H  +H
  678468405 51 YKCSVCDKAFSSYQALGGHKASH 73
               9************9999998886 PP
2zf-C2H214.97.7e-0599121123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C ksF++   L  H r+H
  678468405  99 HECSVCQKSFPTGQALGGHKRKH 121
                78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.23E-951121No hitNo description
PfamPF139124.6E-125174IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5315178IPR007087Zinc finger, C2H2
SMARTSM003550.00735173IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-45173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805375IPR007087Zinc finger, C2H2
PfamPF139124.5E-1398123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.49499121IPR007087Zinc finger, C2H2
SMARTSM003550.02999121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MALDALDFED ASMADEEYLA FCLLMLSGGE RRDPTFHPSV SPAPLMDGGG YKCSVCDKAF  60
SSYQALGGHK ASHRHKLPPP PPSSSIGESR RPNSIRRVHE CSVCQKSFPT GQALGGHKRK  120
HYEGVIGGPK SRTSSSTGNH TPVPRSFDLN TPASPEYEEV ESRVVLSKP
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021987418.12e-39zinc finger protein ZAT10-like
SwissprotQ424308e-41ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A446UNB32e-38A0A446UNB3_TRITD; Uncharacterized protein
STRINGTraes_5BL_7F56360BF.13e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-37salt tolerance zinc finger