PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468684
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 217aa    MW: 23795.3 Da    PI: 8.3285
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468684genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.93.2e-2841081100
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+ +C l  ++     p++q++++ +++k++G++ +l+l++a++ e+r+++++sl+yeA+ r+ +Pv Gavg+++++++ l+q++++++
  678468684   4 SCNGCRVLRKACSGSCLLKTCLqwipsPESQANATVFLAKFYGRAGLLNLISAASLEHRQETFRSLLYEACGRVINPVDGAVGLLTSGNWALCQAAVDAV 103
                6************************9999********************************************************************999 PP

     DUF260  96 llkee 100
                l++++
  678468684 104 LQGSP 108
                88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8033109IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRMSCNGCRV LRKACSGSCL LKTCLQWIPS PESQANATVF LAKFYGRAGL LNLISAASLE  60
HRQETFRSLL YEACGRVINP VDGAVGLLTS GNWALCQAAV DAVLQGSPIT AKFTGEERSF  120
NCDAKEGHPF PYGDIRRMNK VPSELHPVRI RNHFKLTPEV KKFTITEWGP KGEELCSSLR  180
SQIKRVPSSD DSFSVETVEP SLLNPSSPPT LELTLGP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100762.16e-70LOB domain-containing protein 40-like
RefseqXP_027154651.16e-70LOB domain-containing protein 40-like
SwissprotQ9ZW964e-52LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A068TWE64e-67A0A068TWE6_COFCA; Uncharacterized protein
STRINGMigut.E00341.1.p1e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-54LOB domain-containing protein 40