PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678469282

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YC

Protein Properties

Length: 210aa MW: 23796.9 Da PI: 6.3077

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678469282	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.9	6e-53	43	146	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 q++sfw+ q ie++ dfk h+lP+arikki+kadedv+mis+eaPv+++kace+fileltlrsw+h+e+nkrrtl+k+diaaa++rtd+fdflvd++p 678469282 43 QIQSFWSGQmqeIEQTVDFKSHSLPVARIKKIMKADEDVRMISSEAPVVFAKACEMFILELTLRSWIHTEDNKRRTLQKNDIAAAISRTDVFDFLVDTIP 142 799*99877789************************************************************************************ PP NF-YC 98 rdel 101 r+e+ 678469282 143 REET 146 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.4E-32	36	137	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.8E-37	57	129	IPR009072	Histone-fold
Pfam	PF00808	1.5E-21	65	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MNTSGERRQH CKPAGESSES PTPEPAAGFM PYHQRQVYRN PRQIQSFWSG QMQEIEQTVD 60 FKSHSLPVAR IKKIMKADED VRMISSEAPV VFAKACEMFI LELTLRSWIH TEDNKRRTLQ 120 KNDIAAAISR TDVFDFLVDT IPREETNEEA LGIPKPGVPL FRSSPEVMPY YYVIPEAAAS 180 GSAVYPPHPT SPPFMPWPSH PEHHPSNPDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-54	51	143	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678469282

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095726.1	9e-75	nuclear transcription factor Y subunit C-2
Refseq	XP_011095727.1	9e-75	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	2e-68	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A2G9GI22	1e-72	A0A2G9GI22_9LAMI; CCAAT-binding factor, subunit C (HAP5)
STRING	evm.model.supercontig_34.36	1e-71	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	7e-71	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]