PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678469938
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 219aa    MW: 24670.6 Da    PI: 6.4949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678469938genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.1e-13326427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                +C++++rtG CkyG++C+F+H++
  678469938  3 NECPYYMRTGSCKYGASCRFHHPE 26
               68********************96 PP
2zf-CCCH32.12e-10126151227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++ +C+ff++tG Cky ++CkF+H++
  678469938 126 GEQECSFFMKTGDCKYKSKCKFHHPK 151
                6789********************96 PP
3zf-CCCH32.81.1e-10176200226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                + ++C+f++r+G+Ck G+ Ck+ H+
  678469938 176 DKPICKFYYRYGICKLGPACKYDHS 200
                679*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.925127IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5126IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-6525IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713124152IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4124151IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7126151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6127153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4130150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371174202IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-5175201IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8176200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6176202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
GENECPYYMR TGSCKYGASC RFHHPEPAGI LTDGSTTEFC NNEGPQTSYT FPYEGSETMY  60
VSSTQTQILM NSISEWNSKK DAKSTYESGL PIPPAFSMDG AVSAGMYFPL QLWHNNLFEE  120
YPERPGEQEC SFFMKTGDCK YKSKCKFHHP KNRISRPRLM PNTSSVNEKG LPLRPDKPIC  180
KFYYRYGICK LGPACKYDHS SNMDDVAAGS WEAEVSGDA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678469938
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885357.19e-61zinc finger CCCH domain-containing protein 43
TrEMBLA0A2Z7AVE26e-57A0A2Z7AVE2_9LAMI; Zinc finger CCCH domain-containing protein 67
STRINGMigut.I00264.1.p2e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-51C3H family protein