PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678470160

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 303aa MW: 33117.7 Da PI: 7.9421

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678470160	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	8.8e-33	194	249	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ 678470160 194 KARRCWSPELHRRFVQALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 249 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-30	191	252	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.403	191	251	IPR017930	Myb domain
SuperFamily	SSF46689	1.59E-18	192	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-27	194	249	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-8	196	247	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MNGHNHGDVS GKSRGCEGYI QALEEERRKI QVFQRELPLC LELVTQAIDS CKQQLSGTTA 60 EYNFNGQSEC NSDQTSTQTP VFEEFIPIKT TALSEEHELS NGDEHKKSDW LRSAQLWTSQ 120 TPDLVTRENS PRKVAVVEVG RSGAFHPFKK GKTNKDGGSV TTSPREAPSI SPPAAATDGG 180 AAKKDDKEGQ AQRKARRCWS PELHRRFVQA LQQLGGSHAA TPKQIRELMK VDGLTNDEVK 240 SHLQKYRLHT RRPSPTIQSS TANPPPQFAV VVGGIWAMPP EYATVATSGE VGSGVAVASN 300 EIX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-14	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	194	247	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678470160

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070832.1	1e-125	myb family transcription factor EFM
Swissprot	Q9FPE8	1e-82	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2G9GW56	1e-124	A0A2G9GW56_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	2e-81	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]