PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678471125
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22418.9 Da    PI: 6.5125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678471125genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.1e-1018411942
               HHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF 19 gilKKAeELSvLCdaevaviifss 42
               g+lKK +ELS+LC+++++ i++s+
  678471125 18 GLLKKVSELSTLCGIDACAIVYSP 41
               9**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-121886IPR002100Transcription factor, MADS-box
CDDcd002661.77E-181876No hitNo description
PfamPF003191.3E-81842IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MNAHLFVSNW ANVFIQLGLL KKVSELSTLC GIDACAIVYS PYESQPDVWP DGGAARRVLA  60
QFKRMPEMEQ SKKMVNQEMF IRQRIAKAAD QLKKLRKENR EKEMTQLMYQ CLTGKGLQGL  120
GFPELNDLGW VLDQHLKEVY KRIEGLRAAT ATAEMIVPPQ LGVLFGSDED GSGGDEIIVP  180
PFQDSSHHVS SMWCNVFFP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678471125
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088101.15e-80agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-46AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2G9GXU41e-75A0A2G9GXU4_9LAMI; MADS box transcription factor
STRINGMigut.B00884.1.p5e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-41AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]