PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678471639
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 174aa    MW: 19920.5 Da    PI: 6.2189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678471639genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05108129323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                C++C+ +F + s+L+ Hi   H
  678471639 108 CSICDWRFATISELMIHITEnH 129
                ******************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355606790IPR015880Zinc finger, C2H2-like
SMARTSM003550.33106129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTSDRRSRDL NPYSHVEFCF GGRCPPYIPR YELQAAAHGL RNCWVALNYV GTGKPSNAVL  60
GWPADRWPCF LCSSSEPWAM NLHNHVTNEH SFLHEKFLAG WLPWFENCSI CDWRFATISE  120
LMIHITENHP EIAVEARRVL TDFRVTLEEH SARDGLVQVA DPEPIIPFSS PNQA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678471639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-