PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678472204
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 155aa    MW: 16895 Da    PI: 6.5072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678472204genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.13.1e-1711512059
               S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
               + r+YY+C+s+ gC+++k+vers++dp+++++tY+ eHnh+
  678472204 11 MYRGYYKCSSSkGCSARKQVERSRTDPNMLVVTYTAEHNHP 51
               679******998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.2E-10552IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-161153IPR003657WRKY domain
SuperFamilySSF1182906.28E-141153IPR003657WRKY domain
PfamPF031067.4E-141251IPR003657WRKY domain
PROSITE profilePS5081120.2891353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLIVSVLCLE MYRGYYKCSS SKGCSARKQV ERSRTDPNML VVTYTAEHNH PWPTQRNALA  60
GSTRSKIKPP RDLSNPPAST KGDNDLEGLP PCYNYKPALT DSSQFEETLL ADLEEIETVS  120
MDALFAGGGR WPVDAFSLRG SGGAAASASF QIKDS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678472204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085607.16e-34probable WRKY transcription factor 14
RefseqXP_015583599.13e-33LOW QUALITY PROTEIN: probable WRKY transcription factor 14
SwissprotQ9SA808e-28WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A4D8ZZ775e-35A0A4D8ZZ77_SALSN; WRKY transcription factor 22
STRINGXP_002533765.11e-32(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.16e-30WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]