PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678475396

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 90aa MW: 9907.3 Da PI: 10.1217

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678475396	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	26.8	1.5e-08	44	81	25	62
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslv 62 ++ +f n+h+lFG+sn+ k+++ l++ +++am++++ 678475396 44 VSHCQFLNAHRLFGVSNIAKIVRILDPASKDQAMRTII 81 55679*******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.6E-7	46	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MNQQSILQPN GNITSAGTLS WPQSPPYHSP QAAMDPPHKR GPRVSHCQFL NAHRLFGVSN 60 IAKIVRILDP ASKDQAMRTI IPPIQSEDVT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678475396

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-11	LOB domain-containing protein 22