PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 67868
Common NameMICPUCDRAFT_67868
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family AP2
Protein Properties Length: 506aa    MW: 49987.7 Da    PI: 10.2441
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
67868genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.3e-10100150153
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
            sg++GV ++  +++++A+I   + +g  ++  lg++ tae Aa+a++ a+++l
  67868 100 SGFRGVAFHGVSKKFRARITSNTGDG--RQRALGYYETAELAARAYDVAAREL 150
            79****************99955565..999*******************987 PP
2AP229.51.9e-09247294152
    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
            +g+kGVr +  +g+++A+I++       + kr +lg+f  a  A +a++aa+++
  67868 247 TGIKGVRLKG-KGSYEARIKVrG-----NdKRMQLGRFPDARSAMRAYDAAARR 294
            69*****887.7*********33.....56**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-5100150IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-12100161IPR016177DNA-binding domain
PROSITE profilePS5103212.681101160IPR001471AP2/ERF domain
SMARTSM003805.1E-6101166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-10102161IPR001471AP2/ERF domain
PROSITE profilePS510329.941248294IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-7248294IPR016177DNA-binding domain
SMARTSM003800.006248304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-9250294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSSSGDVPIS HLHLNGAATA GGESRSHDKG GGGGRGTVAD AEGDRGGSDA IGASAQTAAG  60
AKRKAGALVV GTGDRRSGVG AGASSNAGPG RNARRKIGKS GFRGVAFHGV SKKFRARITS  120
NTGDGRQRAL GYYETAELAA RAYDVAAREL GVSADLLNFP TDAETAEGVG NGGADASAPP  180
PADPPPPRKG AGAGRPTKRE GVASLELAIV GPNGESEAAL VAAAVGDGGG DGGAAVVAVK  240
EGKATATGIK GVRLKGKGSY EARIKVRGND KRMQLGRFPD ARSAMRAYDA AARRAGYCVN  300
RVEATGDLID TQSLAAIGVA CDVLKGVKEL THEEAAKLAI GELPAVPGGV EVVATNSAAI  360
AGGAGGGKKY ATFVRVKPGI HEYLGTFDTL EESAKKLKAS RPSIRGLGKE WAKIAGGAAG  420
AKEKGGGKGT GTGGGGDDAS GGGGSKKPGK KRTLGAKHGI IAEDDGVGDA DHRARLVAAE  480
EAGRFGLGGY VAAVADADLG TPRHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064756.10.0predicted protein
TrEMBLC1NA960.0C1NA96_MICPC; Predicted protein
STRINGXP_003064756.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1540922
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]