PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 6792
Common NameSELMODRAFT_6791, SELMODRAFT_6792
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 140aa    MW: 16145.7 Da    PI: 9.747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
6792genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-191468256
              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
      6792 14 RKKLRLSKEQSALLEKSFKEHSTLNPKQKNALAKHLNLRPRQVEVWFQNRRARTK 68
              788899***********************************************98 PP
2HD-ZIP_I/II1277.9e-4114102190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rlskeq++lLE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e Lkr++++l+een+rL+ke +eLr +
         6792  14 RKKLRLSKEQSALLEKSFKEHSTLNPKQKNALAKHLNLRPRQVEVWFQNRRARTKLKQTEIDCELLKRCCETLTEENRRLQKELQELR-A 102
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.071070IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-181172IPR009057Homeodomain-like
SuperFamilySSF466891.75E-181278IPR009057Homeodomain-like
SMARTSM003891.1E-151274IPR001356Homeobox domain
CDDcd000862.24E-141371No hitNo description
PfamPF000462.4E-161468IPR001356Homeobox domain
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PfamPF021839.5E-1170103IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-2270113IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
VSSRGSDEED GAPRKKLRLS KEQSALLEKS FKEHSTLNPK QKNALAKHLN LRPRQVEVWF  60
QNRRARTKLK QTEIDCELLK RCCETLTEEN RRLQKELQEL RAIKVPPPCV ISQDFYMPLP  120
AATLTMCPSC ERLAAVDTRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974113.25e-97homeobox-leucine zipper protein HOX19
SwissprotA2YW036e-66HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotA2Z1U18e-67HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE27e-66HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
SwissprotQ6YPD06e-66HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLD8RD826e-97D8RD82_SELML; Uncharacterized protein (Fragment)
STRINGEFJ250681e-97(Selaginella moellendorffii)
STRINGEFJ299741e-97(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-68homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]