PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

68039

Common Name

SELMODRAFT_68039

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 222aa MW: 24795.2 Da PI: 10.5252

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
68039	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.9	1.9e-16	9	100	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ +laLi+a e+ +l+rg+lk+++W+ev++ + +++ +s +qCk++++ l+k+yk +k++ + ++s s++p+f +l+ 68039 9 WTEGATLALIDAWGERYLHLNRGNLKQKHWREVADEVtkrscldesSSGRSGKSDVQCKNRLDTLKKKYKIEKARLAS--EGSPSKWPFFVKLD 100 *****************************************99877778899*******************9..688889**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-25	7	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
PGHGRDDAWT EGATLALIDA WGERYLHLNR GNLKQKHWRE VADEVTKRSC LDESSSGRSG 60 KSDVQCKNRL DTLKKKYKIE KARLASEGSP SKWPFFVKLD ELIGPSKKGK KRSTPPPSNN 120 GIAPAAAAAA ALTATPNNGN ATAANEGRAS SSKRRKVEGS FKDLARAIIK FGEVYERIES 180 AKQQQLMDLE RQRMEFTKDL ELQRMQLFMQ TQVELAKMKH GK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00488	DAP	Transfer from AT5G05550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024531829.1	1e-145	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	4e-36	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	D8RJB4	1e-163	D8RJB4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ27884	1e-164	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11100.1	2e-45	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	68039
Entrez Gene	9641830

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]