PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

68508

Common Name

SELMODRAFT_48444, SELMODRAFT_68508

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ZF-HD

Protein Properties

Length: 184aa MW: 20639.4 Da PI: 9.5958

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
68508	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.8	5.2e-33	1	55	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa +Ggha+DGCgEfmps geegt+++lkC+AC+CHRnFHRreve 68508 1 VRYRECLKNHAAGIGGHALDGCGEFMPS-GEEGTIESLKCSACDCHRNFHRREVEG 55 69***********************9.999*******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.4E-30	1	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	2	65	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-32	2	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.068	3	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.65E-19	115	183	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-30	119	183	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.5E-27	122	179	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
VRYRECLKNH AAGIGGHALD GCGEFMPSGE EGTIESLKCS ACDCHRNFHR REVEGAKDVM 60 SKKKPSSVLP LQQHGSPLGS MARSPGALVA LSNSDQSDDH DLGAQHQTTY SLAHHLIPSA 120 IKKRFRTKFT NEQKEKMFHF AHRLGWKIQK HDEGEVQQFC ADVGVKRHVL KVWMHNNKNT 180 FGKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-27	123	180	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965557.2	1e-139	zinc-finger homeodomain protein 2
Refseq	XP_024543836.1	1e-139	zinc-finger homeodomain protein 2
Swissprot	Q6YXH5	2e-62	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	D8R3P4	1e-136	D8R3P4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ15852	1e-136	(Selaginella moellendorffii)
STRING	EFJ32977	1e-136	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	68508
Entrez Gene	9634609 \| 9654153

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]