PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 68546
Common NameMICPUCDRAFT_68546
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 326aa    MW: 34103.9 Da    PI: 10.2161
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
68546genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.7e-13180224347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
            68546 180 PWTEEEHRLFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 224
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.83184IPR001005SANT/Myb domain
SuperFamilySSF466892.14E-63292IPR009057Homeodomain-like
CDDcd001670.001943581No hitNo description
PROSITE profilePS500905.6913582IPR017877Myb-like domain
PROSITE profilePS5129417.402172229IPR017930Myb domain
SuperFamilySSF466891.57E-16175230IPR009057Homeodomain-like
SMARTSM007175.2E-11177227IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.7E-17177227IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.5E-11178223IPR009057Homeodomain-like
PfamPF002492.9E-11180224IPR001005SANT/Myb domain
CDDcd001673.23E-10180225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVDAFNANFS LDGLGLELGR SPGYGGLDML IQDQWTVEDD KLFENTLAQF GDLDGEDSWT  60
QFGANVPGKS MVGLKRRFNL LQEDIKNIES GRVPLPHYDA RNDTAHQQMM QPAHHAVPIA  120
QVAQSNPTGN AKASSKGSSG HSPKKGGGSG ANASKNGANG AKAKSAPAKT TDQERRKGIP  180
WTEEEHRLFL LGLAKFGKGD WRSISRNFVI SRTPTQVASH AQKYFIRLNS MNKKDKRRSS  240
IHDITSVKGS GKGGNAKGAA NNDGGGSSHS GSDASANIGG TSAALPVAAR GGMGHAGGGY  300
YASGPVPVGF MQTPGMYGVN AHGGM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062320.10.0predicted protein
SwissprotQ9FNN63e-61SRM1_ARATH; Transcription factor SRM1
TrEMBLC1N3550.0C1N355_MICPC; Predicted protein
STRINGXP_003062320.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-37Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]