PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

68988

Common Name

SELMODRAFT_59324, SELMODRAFT_68988

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 111aa MW: 12345.2 Da PI: 8.4917

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
68988	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	151.9	1.5e-47	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q+++l++ela +++ 68988 8 PCAACKFLRRKCTPECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPPHQREDAVNSLAYEADARVKDPVYGCVGAISMLQRQVARLQHELAIAQQD 107 7***********************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.918	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-46	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MASSSSSPCA ACKFLRRKCT PECVFAPYFP PDQPHKFANV HKIFGASNIT KLLNELPPHQ 60 REDAVNSLAY EADARVKDPV YGCVGAISML QRQVARLQHE LAIAQQDLAR Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-61	4	111	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-61	4	111	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024530896.1	2e-78	protein ASYMMETRIC LEAVES 2
Refseq	XP_024539311.1	3e-78	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024539312.1	3e-78	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024539313.1	3e-78	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024539314.1	3e-78	protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	1e-62	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	D8RGG9	5e-77	D8RGG9_SELML; Uncharacterized protein (Fragment)
STRING	EFJ20525	9e-78	(Selaginella moellendorffii)
STRING	EFJ28594	9e-78	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-62	LBD family protein

Link Out ? help Back to Top
Phytozome	68988
Entrez Gene	9646608 \| 9653478

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]