PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

69131

Common Name

SELMODRAFT_69130, SELMODRAFT_69131

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 163aa MW: 18923.8 Da PI: 10.4854

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
69131	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171	3.6e-53	6	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeel+v+yL kk++ ++ ++ +i+evd+yk++PwdLpk++ +e+ewyfFs+r++ky++g r+nra++sgyWkatg+dk+++s+ +g++v 69131 6 LPPGFRFHPTDEELMVHYLSKKAAPSHpftAPI-PIIAEVDLYKFDPWDLPKHALFGEREWYFFSPRERKYPNGARPNRAAASGYWKATGTDKPICSStDGRKV 108 79******************99888643233.45***********8777899***********************************9989999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfykgrap+g kt+W+mheyrl 69131 109 GVKKALVFYKGRAPRGAKTNWIMHEYRL 136 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-63	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.781	6	161	IPR003441	NAC domain
Pfam	PF02365	6.3E-28	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
VAELQLPPGF RFHPTDEELM VHYLSKKAAP SHPFTAPIPI IAEVDLYKFD PWDLPKHALF 60 GEREWYFFSP RERKYPNGAR PNRAAASGYW KATGTDKPIC SSTDGRKVGV KKALVFYKGR 120 APRGAKTNWI MHEYRLVDNP HKPRRKGSRL DDWVLCRIYR KKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-78	1	163	15	170	NAC domain-containing protein 19
3swm_B	4e-78	1	163	15	170	NAC domain-containing protein 19
3swm_C	4e-78	1	163	15	170	NAC domain-containing protein 19
3swm_D	4e-78	1	163	15	170	NAC domain-containing protein 19
3swp_A	4e-78	1	163	15	170	NAC domain-containing protein 19
3swp_B	4e-78	1	163	15	170	NAC domain-containing protein 19
3swp_C	4e-78	1	163	15	170	NAC domain-containing protein 19
3swp_D	4e-78	1	163	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269\|PubMed:15319476}.
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961563.2	1e-120	NAC domain-containing protein 67
Refseq	XP_002971251.2	1e-120	NAC domain-containing protein 67
Swissprot	Q8H4S4	1e-77	NAC10_ORYSJ; NAC domain-containing protein 10
Swissprot	Q9LDY8	4e-79	NAC55_ARATH; NAC domain-containing protein 55
TrEMBL	D8QRS1	1e-117	D8QRS1_SELML; Uncharacterized protein (Fragment)
STRING	EFJ27849	1e-118	(Selaginella moellendorffii)
STRING	EFJ36823	1e-118	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	2e-81	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	69131
Entrez Gene	9630485 \| 9641792

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Zheng XY, et al. Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 2012. 11(6): p. 587-96 [PMID:22704619] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Gimenez-Ibanez S, et al. JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] Fu Y,Ma H,Chen S,Gu T,Gong J Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055. J. Exp. Bot., 2018. 69(3): p. 579-588 [PMID:29253181]