PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 69240
Common NameMICPUCDRAFT_69240
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 234aa    MW: 27201.3 Da    PI: 12.6232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
69240genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.3e-141862147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E+  +++a++++  + Wk+I  ++g ++t  q++s+ qky
            69240 18 RESWTEKEHNMFLEAINMYDRD-WKKIETYVG-TKTVIQIRSHAQKY 62
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-171267IPR009057Homeodomain-like
PROSITE profilePS5129415.8171367IPR017930Myb domain
TIGRFAMsTIGR015576.3E-181665IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.0E-71758IPR009057Homeodomain-like
SMARTSM007171.9E-111765IPR001005SANT/Myb domain
PfamPF002494.1E-121862IPR001005SANT/Myb domain
CDDcd001678.69E-92063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKPDASKARK PYTITKSRES WTEKEHNMFL EAINMYDRDW KKIETYVGTK TVIQIRSHAQ  60
KYFLKVRARQ IPPPRRTRRP SGRRRGRNVN RPPRRCSNHL MLDCFFFDTR HPPTSLSLSP  120
LPGPHRSKRT ARASTSRRRD RNASPRRRTR KNPPRAARHR AEGREPRLRR RRRKPPPPPP  180
RERERPRPPP RRPTRSAGTT STSTPRVGCK VRAGRGKGGA WARGATRSPA RGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174LRRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060779.11e-162predicted protein
TrEMBLC1MXY41e-160C1MXY4_MICPC; Predicted protein
STRINGXP_003060779.11e-161(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.23e-31MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]