PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

69265

Common Name

SELMODRAFT_49098, SELMODRAFT_69265

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Protein Properties

Length: 105aa MW: 12230.7 Da PI: 8.2292

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
69265	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.8	4e-18	2	99	1	83
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k lt+sdv+k++rlv+ k++a+e+ +++ ++++ l + d ++++W ++++y+++s++yv++kGW ++vk +L gD v F 69265 2 FSKLLTNSDVNKLNRLVIHKRHARECfpklseaakpgnpdsSIPDPNETVLFFHDHESEQWAFNFKYWGSSKTYVFSKGWIQYVKRYNLACGDEVSFF 99 889***********************999988887777755555788999***************************************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.6E-27	1	104	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.26E-18	1	105	No hit	No description
PROSITE profile	PS50863	10.842	2	105	IPR003340	B3 DNA binding domain
SMART	SM01019	8.2E-9	2	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-14	2	98	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.19E-22	2	104	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
LFSKLLTNSD VNKLNRLVIH KRHARECFPK LSEAAKPGNP DSSIPDPNET VLFFHDHESE 60 QWAFNFKYWG SSKTYVFSKG WIQYVKRYNL ACGDEVSFFR EEPSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	2e-19	1	100	13	102	DNA-binding protein RAV1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8R334	5e-73	D8R334_SELML; Uncharacterized protein (Fragment)
STRING	EFJ14479	9e-74	(Selaginella moellendorffii)
STRING	EFJ33209	9e-74	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP365	16	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	2e-22	B3 family protein

Link Out ? help Back to Top
Phytozome	69265
Entrez Gene	9644590 \| 9655373

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]