PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

69582

Common Name

SELMODRAFT_59616, SELMODRAFT_69582

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YC

Protein Properties

Length: 89aa MW: 10102.9 Da PI: 10.6117

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
69582	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.8	1.3e-14	8	85	18	94
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif.dflvd 94 ++Plarik+i+k d+++k+++ a + +++a + fi lt ++ + + kr++l+ s ++aav+r f dfl + 69582 8 SVSFPLARIKNIIKLDKEIKVVARPALMAITQAAQQFIESLTSIAFSEMLKGKRKSLRLSHLEAAVKRKREFlDFLDE 85 4689***************************************************************99877588754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	6.8E-12	10	73	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-18	11	86	IPR009072	Histone-fold
SuperFamily	SSF47113	9.05E-14	11	85	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
EKNATNISVS FPLARIKNII KLDKEIKVVA RPALMAITQA AQQFIESLTS IAFSEMLKGK 60 RKSLRLSHLE AAVKRKREFL DFLDESMDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	76	KRKSLRLSHLEAAVKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024521769.1	5e-56	uncharacterized protein LOC112343101
Refseq	XP_024535208.1	5e-56	uncharacterized protein LOC112347877
TrEMBL	D8QY57	6e-56	D8QY57_SELML; Uncharacterized protein (Fragment)
STRING	EFJ24094	1e-56	(Selaginella moellendorffii)
STRING	EFJ35144	1e-56	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9472	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-12	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	69582
Entrez Gene	9637231 \| 9655210

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]