PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

69727

Common Name

SELMODRAFT_59730, SELMODRAFT_69727

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 73aa MW: 8482.76 Da PI: 12.0807

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
69727	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1.1e-09	14	62	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lvd+v + G+g W+ I r Rt+ ++k++w+++l 69727 14 PWTLREVMALVDGVSRCGTGKWADIKRLAFsaiAYRTPVDLKDKWRNLL 62 8**************************9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-14	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.124	7	66	IPR017930	Myb domain
SMART	SM00717	1.2E-7	11	64	IPR001005	SANT/Myb domain
CDD	cd11660	8.38E-20	13	63	No hit	No description
SuperFamily	SSF46689	3.66E-18	13	72	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-7	14	62	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
TDRKSGSRRK HHRPWTLREV MALVDGVSRC GTGKWADIKR LAFSAIAYRT PVDLKDKWRN 60 LLRASRVHSH SSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024526766.1	6e-45	uncharacterized protein LOC9652298 isoform X2
Refseq	XP_024543064.1	5e-45	uncharacterized protein LOC9635950 isoform X2
TrEMBL	D8R5S2	4e-45	D8R5S2_SELML; Uncharacterized protein (Fragment)
STRING	EFJ16592	7e-46	(Selaginella moellendorffii)
STRING	EFJ32533	7e-46	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1645	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	8e-23	TRF-like 6

Link Out ? help Back to Top
Phytozome	69727
Entrez Gene	9635950 \| 9652298

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]