PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 70339
Common NameMICPUN_70339
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 232aa    MW: 26532.8 Da    PI: 6.18
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
70339genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.1e-1287112126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              yk  +C+++ +tG+C +Gd+CkF H+
    70339  87 YKPDICKDYKETGYCGFGDSCKFLHD 112
              899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-1083118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.59186114IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-886113IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1087112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1387118IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.09E-9170216No hitNo description
PfamPF139201.6E-7170214No hitNo description
Gene3DG3DSA:3.30.40.104.5E-11170217IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM001841.4E-5171211IPR001841Zinc finger, RING-type
CDDcd001626.20E-5171215No hitNo description
PROSITE profilePS500899.922171212IPR001841Zinc finger, RING-type
PROSITE patternPS005180189198IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
NAGATKELEI DTEKDRDGRA IREKVLKTAA ERADGFEDDK KYRGLNSYVD YRAGFRKEHS  60
IASEKGSGAH GPMRASSNVR MTFIMDYKPD ICKDYKETGY CGFGDSCKFL HDRGDYKQGW  120
QLDKEWEEKE KQRKAALAKL EQMERNMGED GVCVPLEDDE DDEEDGIPPA CPICEKTWDA  180
IRDPVVTKCK HYFCEHCALR HNAKEKACFV CHRPTGGTFN TAKEIVKRVK EM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-551229113317RING finger protein 113A
5z58_M2e-551229113317RING finger protein 113A
6ff4_t2e-551229113317RING finger protein 113A
6ff7_t2e-551229113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013270.0CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002502788.11e-173predicted protein, partial
SwissprotQ8GX844e-83C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLC1E7V41e-171C1E7V4_MICCC; Uncharacterized protein (Fragment)
STRINGXP_002502788.11e-172(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.17e-85C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]