PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

71079

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C2H2

Protein Properties

Length: 1202aa MW: 126800 Da PI: 5.6264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
71079	genome	JGI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.40.420	9.5E-12	75	174	IPR008972	Cupredoxin
SuperFamily	SSF49503	2.75E-11	93	181	IPR008972	Cupredoxin
PROSITE profile	PS50157	10.45	392	419	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	394	414	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1202 aa Download sequence Send to blast
MATSPPSIAR DTPPTWDEEL ALAETDESSD DDDEEQRIAR PTTWVGGGAR TASPLITTTS 60 PTNNNSNSNS SATTATTTTI STPPPPPSSA KIWIDEMRFV PADLTVRVGT TVAWSQLESC 120 ASRNFLEIVD DDEAPVAASP PLAAGESWSW TFDACGSYHF RSLVYVFMKG SVTVVDADVA 180 GDVATTGGAD GNKEDAGIVV ADAYDFDASP EAAAAARLEK RAENRERRVR AAEEEKARAT 240 RAAEGMMREI ESRAQAEAAT LFSSDDDDDD DNDGNGGTNG TPYAALASSD DEEAEEAAAM 300 NTTTTETTEI EIETEVETKW RLEVEEREAS RPVTVSQLLE RTNERRLSAT LSETSSGRGS 360 GANLPETAGL SPLSSTFSSS SIPVPTHPTP TARCDKCKRA FASTTNLARH RQSHRFDGKS 420 GRHGKPFVPP ATREQLAACW RNLCAETRRE VLDLGVGGEA GVLVLTAFAS RGPGSFALVS 480 SGVNNKDLNG DVPADGGSGD VRARYAAAGD VLRTYVDGDV NVAKTVDADA FLTALHDASE 540 GGFLGPKCAV DLSSMVSERN LEAALALLLE ERLMRAYVKE RGAEAERTQR LLMAELDEAA 600 ADKERREAQK MKMKAKKAKQ KSRKRAGAGA GAGAGATETG GKSTAHDSDG DDDRGGDGDG 660 GGGVDDDVDE DARREEEKRR AEAEERAAAS EREHRRNEAA AAAAAAEYAE REAREAVARA 720 RRRESAAKAV EAAAETTTEA AAAFAVGGGA LAASPYGKGR AKTAAAAAAA AAVGAXXXXX 780 XXPGPPPGPP PVATPVAAPT TPTTSRHPVH GDIPVAQLWT PPRDSAPPTA SPAYDAPPVA 840 IAVPAPPPPG PPPAAYAHPG PYPPPGGAYG VPAMAPHGLH MGAYDALYVH HYMQAMASLH 900 QQHLAGGALP AETLAPAPAP APTTSGAPIS RTRRDLSRNE TRDAVRKVTP LGAPHASRSR 960 PSALTGDLES TPPRTTRRSA RVTRDRRRVA RKRTRLRVKK EYLQHSAHSH HIQPQPHEVR 1020 QQPFVSISCT LFFGKFFLAM RISVSAAVFC VLFALQVSQV QASLGPVQHD GIKMPAGVST 1080 PKSIGFSEII ERGPDRRTMR DESAFATCVL RRFASGGAFA ASNTVIFPVE TMGGNYCFAS 1140 EEDCCELNAG LVAGIVIGCT VGLTLLIVAC AWCCKCCCFQ RKVQPAQPGV VMMQPAYVLP 1200 K*

Sequence ? help Back to Top

Protein Sequence Length: 1202 aa Download sequence Send to blast

MATSPPSIAR DTPPTWDEEL ALAETDESSD DDDEEQRIAR PTTWVGGGAR TASPLITTTS  60
PTNNNSNSNS SATTATTTTI STPPPPPSSA KIWIDEMRFV PADLTVRVGT TVAWSQLESC  120
ASRNFLEIVD DDEAPVAASP PLAAGESWSW TFDACGSYHF RSLVYVFMKG SVTVVDADVA  180
GDVATTGGAD GNKEDAGIVV ADAYDFDASP EAAAAARLEK RAENRERRVR AAEEEKARAT  240
RAAEGMMREI ESRAQAEAAT LFSSDDDDDD DNDGNGGTNG TPYAALASSD DEEAEEAAAM  300
NTTTTETTEI EIETEVETKW RLEVEEREAS RPVTVSQLLE RTNERRLSAT LSETSSGRGS  360
GANLPETAGL SPLSSTFSSS SIPVPTHPTP TARCDKCKRA FASTTNLARH RQSHRFDGKS  420
GRHGKPFVPP ATREQLAACW RNLCAETRRE VLDLGVGGEA GVLVLTAFAS RGPGSFALVS  480
SGVNNKDLNG DVPADGGSGD VRARYAAAGD VLRTYVDGDV NVAKTVDADA FLTALHDASE  540
GGFLGPKCAV DLSSMVSERN LEAALALLLE ERLMRAYVKE RGAEAERTQR LLMAELDEAA  600
ADKERREAQK MKMKAKKAKQ KSRKRAGAGA GAGAGATETG GKSTAHDSDG DDDRGGDGDG  660
GGGVDDDVDE DARREEEKRR AEAEERAAAS EREHRRNEAA AAAAAAEYAE REAREAVARA  720
RRRESAAKAV EAAAETTTEA AAAFAVGGGA LAASPYGKGR AKTAAAAAAA AAVGAXXXXX  780
XXPGPPPGPP PVATPVAAPT TPTTSRHPVH GDIPVAQLWT PPRDSAPPTA SPAYDAPPVA  840
IAVPAPPPPG PPPAAYAHPG PYPPPGGAYG VPAMAPHGLH MGAYDALYVH HYMQAMASLH  900
QQHLAGGALP AETLAPAPAP APTTSGAPIS RTRRDLSRNE TRDAVRKVTP LGAPHASRSR  960
PSALTGDLES TPPRTTRRSA RVTRDRRRVA RKRTRLRVKK EYLQHSAHSH HIQPQPHEVR  1020
QQPFVSISCT LFFGKFFLAM RISVSAAVFC VLFALQVSQV QASLGPVQHD GIKMPAGVST  1080
PKSIGFSEII ERGPDRRTMR DESAFATCVL RRFASGGAFA ASNTVIFPVE TMGGNYCFAS  1140
EEDCCELNAG LVAGIVIGCT VGLTLLIVAC AWCCKCCCFQ RKVQPAQPGV VMMQPAYVLP  1200
K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	71079