PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 71153
Common NameSELMODRAFT_66538, SELMODRAFT_71153
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family RAV
Protein Properties Length: 238aa    MW: 27060.5 Da    PI: 10.1347
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
71153genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.6e-13553155
    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
           s+ykGV   + +gr+ A+I++      ++r++lg+f+t+ eAaka++ a+ k++g
  71153  5 SQYKGVVPQP-NGRFGAQIYEK-----HQRVWLGTFDTEVEAAKAYDVAATKIRG 53
           78****9888.8*********3.....5**********99*************98 PP
2B398.63.7e-31133234198
            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
            ffkv tpsdv+k++rlv+pk++ae++    ++e++  l++ede+g+ W+++++y+ +s++yvlt+GW++Fvk+++L++gD v F +     s+ +l++++ r
  71153 133 FFKVVTPSDVGKLNRLVIPKHHAERCfpLAPHEKGLLLSFEDERGKHWRFRYSYWSSSQSYVLTRGWSRFVKDKQLQVGDAVFFDRAtTAgSSCKLFIHWKR 234
            99*************************966677899************************************************955233455566666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-17561IPR016177DNA-binding domain
CDDcd000183.44E-25563No hitNo description
PfamPF008472.9E-8653IPR001471AP2/ERF domain
SMARTSM003807.0E-30667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-21661IPR001471AP2/ERF domain
PROSITE profilePS5103219.375661IPR001471AP2/ERF domain
PRINTSPR003678.9E-5718IPR001471AP2/ERF domain
PRINTSPR003678.9E-52743IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.8E-37126230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-30129231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-22131216No hitNo description
PfamPF023627.6E-29133235IPR003340B3 DNA binding domain
SMARTSM010195.5E-22133236IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734133234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
KLPSSQYKGV VPQPNGRFGA QIYEKHQRVW LGTFDTEVEA AKAYDVAATK IRGNDALTNF  60
PPVDESEPES AFLSLHSKEQ IIDMLRKHTY NQQLIKNTAL DTSSSSSSTT TTNNHNAPKS  120
SSLLAQHHRE HLFFKVVTPS DVGKLNRLVI PKHHAERCFP LAPHEKGLLL SFEDERGKHW  180
RFRYSYWSSS QSYVLTRGWS RFVKDKQLQV GDAVFFDRAT TAGSSCKLFI HWKRKAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-481292354113B3 domain-containing transcription factor NGA1
5os9_B7e-481292354113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530711.11e-144AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM96e-92RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLD8QMJ31e-178D8QMJ3_SELML; Uncharacterized protein (Fragment)
STRINGEFJ315641e-179(Selaginella moellendorffii)
STRINGEFJ385871e-179(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-92related to ABI3/VP1 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  3. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  4. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  5. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]