PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

71303

Common Name

NAM2-1, NAM2-2, SELMODRAFT_67245, SELMODRAFT_71303

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 168aa MW: 19442 Da PI: 10.204

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
71303	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.1	2.4e-55	1	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk......... 95 lppGfrFhPtdeel+++yL kkve++k+++ ++i++vd++k ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd++++++ 71303 1 LPPGFRFHPTDEELIDCYLIKKVENNKFSV-RAIQDVDLNKNEPWELPDKAKMGEKEWYFFTLRDRKYPTGMRTNRATEAGYWKATGKDRDITRTsansttnss 103 79**************************.89***********99999************************************98776665554 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg kktLvfy+grapkg+kt+W+mheyrle 71303 104 SNTLVGAKKTLVFYRGRAPKGVKTNWIMHEYRLE 137 4445**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	58.54	1	162	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-61	1	162	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	2	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
LPPGFRFHPT DEELIDCYLI KKVENNKFSV RAIQDVDLNK NEPWELPDKA KMGEKEWYFF 60 TLRDRKYPTG MRTNRATEAG YWKATGKDRD ITRTSANSTT NSSSNTLVGA KKTLVFYRGR 120 APKGVKTNWI MHEYRLEGEA AFLHNSRTSK DSEWVVCRIF QKSPGGKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	1	168	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	1	168	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	1	168	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	1	168	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	1	168	20	174	NAC domain-containing protein 19
3swm_B	4e-56	1	168	20	174	NAC domain-containing protein 19
3swm_C	4e-56	1	168	20	174	NAC domain-containing protein 19
3swm_D	4e-56	1	168	20	174	NAC domain-containing protein 19
3swp_A	4e-56	1	168	20	174	NAC domain-containing protein 19
3swp_B	4e-56	1	168	20	174	NAC domain-containing protein 19
3swp_C	4e-56	1	168	20	174	NAC domain-containing protein 19
3swp_D	4e-56	1	168	20	174	NAC domain-containing protein 19
4dul_A	4e-56	1	168	17	171	NAC domain-containing protein 19
4dul_B	4e-56	1	168	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002967512.2	1e-124	protein CUP-SHAPED COTYLEDON 1
Swissprot	Q9FLJ2	3e-79	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	D8QQ60	1e-123	D8QQ60_SELML; Uncharacterized protein NAM2-1 (Fragment)
STRING	EFJ32111	1e-124	(Selaginella moellendorffii)
STRING	EFJ37734	1e-124	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	4e-79	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	71303
Entrez Gene	9636083 \| 9655800

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]