PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

71417

Common Name

SELMODRAFT_71417

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 179aa MW: 20973.1 Da PI: 10.4344

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
71417	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.4	1e-47	1	125	4	128
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106 GfrFhPtdeelv +yL++k+++k +++ +vi+ +diy+++Pw+Lpk +e+ wyfF+ rd+k +++ r+nr+tksg+Wkatg d+++ + +++ vglkktL 71417 1 GFRFHPTDEELVGFYLRRKIQDKAFPF-QVITPLDIYNYDPWELPKLSVCGENAWYFFCLRDHKFRNSLRPNRITKSGFWKATGPDRPISTVeTSSCVGLKKTL 103 9************************.99***********75556899********************************98756777*** PP NAM 107 vfykgrapkgektdWvmheyrl 128 vfykgra k++kt+Wvmhe+rl 71417 104 VFYKGRATKATKTEWVMHEFRL 125 ******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.591	1	168	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-51	1	168	IPR003441	NAC domain
Pfam	PF02365	7.7E-27	1	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
GFRFHPTDEE LVGFYLRRKI QDKAFPFQVI TPLDIYNYDP WELPKLSVCG ENAWYFFCLR 60 DHKFRNSLRP NRITKSGFWK ATGPDRPIST VETSSCVGLK KTLVFYKGRA TKATKTEWVM 120 HEFRLPTIGS SAQGSCEVRK KSFFSLILPR NDFSVQQESW SVCRIFRKRW SPRKNSASD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	1	174	20	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	1	174	20	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	1	174	20	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	1	174	20	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	1	174	23	174	NAC domain-containing protein 19
3swm_B	1e-45	1	174	23	174	NAC domain-containing protein 19
3swm_C	1e-45	1	174	23	174	NAC domain-containing protein 19
3swm_D	1e-45	1	174	23	174	NAC domain-containing protein 19
3swp_A	1e-45	1	174	23	174	NAC domain-containing protein 19
3swp_B	1e-45	1	174	23	174	NAC domain-containing protein 19
3swp_C	1e-45	1	174	23	174	NAC domain-containing protein 19
3swp_D	1e-45	1	174	23	174	NAC domain-containing protein 19
4dul_A	1e-45	1	174	20	171	NAC domain-containing protein 19
4dul_B	1e-45	1	174	20	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961966.2	1e-114	putative NAC domain-containing protein 94 isoform X1
Swissprot	Q9FIW5	8e-68	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	D8QRD1	1e-130	D8QRD1_SELML; Uncharacterized protein (Fragment)
STRING	EFJ37226	1e-131	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	3e-70	NAC domain containing protein 94

Link Out ? help Back to Top
Phytozome	71417
Entrez Gene	9657244

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]