PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 71469
Common NameSELMODRAFT_57828, SELMODRAFT_71469
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 128aa    MW: 14892.1 Da    PI: 10.2047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
71469genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.4e-4911283128
    NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglk 103
            pGfrFhPtdeel+++yL++kve+k+l + evi+++diyk++Pw+Lp +++  +e+  yfF++rd+ky++++r+nr+t+ g+Wkatg+d+ v+s+  +++ +glk
  71469   1 PGFRFHPTDEELLTFYLHRKVEHKPLAI-EVITQLDIYKFDPWELPaSSTGCGEQASYFFCPRDRKYRNSSRPNRVTSGGFWKATGTDRVVHSAkpGHKCIGLK 103
            8*************************99.99***************44555688899***********************************98878888**** PP

    NAM 104 ktLvfykgrapkgektdWvmheyrl 128
            k+Lvfykgra +++ktdW+mhe+r+
  71469 104 KSLVFYKGRAARPVKTDWMMHEFRM 128
            ***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-511128IPR003441NAC domain
PfamPF023656.8E-261128IPR003441NAC domain
PROSITE profilePS5100550.6361128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
PGFRFHPTDE ELLTFYLHRK VEHKPLAIEV ITQLDIYKFD PWELPASSTG CGEQASYFFC  60
PRDRKYRNSS RPNRVTSGGF WKATGTDRVV HSAKPGHKCI GLKKSLVFYK GRAARPVKTD  120
WMMHEFRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-45112817140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531169.17e-91protein FEZ isoform X2
RefseqXP_024539265.18e-91protein FEZ isoform X2
SwissprotQ9ZVH01e-65FEZ_ARATH; Protein FEZ
TrEMBLD8RHM74e-92D8RHM7_SELML; Uncharacterized protein (Fragment)
STRINGEFJ203327e-93(Selaginella moellendorffii)
STRINGEFJ283097e-93(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.17e-68NAC family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]