PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 72702
Common NameSELMODRAFT_72702, SELMODRAFT_72704
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 102aa    MW: 11642.4 Da    PI: 9.6846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
72702genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-102673455
           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  72702 26 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 73
           8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-181990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-102077No hitNo description
Gene3DG3DSA:4.10.280.103.9E-182289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6692272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-72673IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-102878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
ENSKPPEPPK QDYIHVRARR GQATDSHSLA ERVRREKISE RMKFLQDLVP GCSKVTGKAV  60
MLDEIINYVQ SLQRQVEFLS MKLAAVNPRL DINLDGLLTK EV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966517.23e-67transcription factor bHLH49 isoform X1
RefseqXP_002982358.23e-67transcription factor bHLH49 isoform X1
RefseqXP_024526894.13e-67transcription factor bHLH49 isoform X2
RefseqXP_024543148.13e-67transcription factor bHLH49 isoform X2
SwissprotQ9CAA91e-54BH049_ARATH; Transcription factor bHLH49
TrEMBLD8R5U84e-69D8R5U8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ166037e-70(Selaginella moellendorffii)
STRINGEFJ325447e-70(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]