PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

72886

Common Name

LEAFY, SELMODRAFT_417910

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LFY

Protein Properties

Length: 100aa MW: 11392.1 Da PI: 6.5379

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
72886	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	125.1	9.3e-39	11	93	45	127
FLO_LFY 45 arklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaek 127 r++++l+elfk+yGvr++t+ak+ae+Gftv+tLv+m+d+el+d++k++ e ++++llvGe+yGik+a+raer++le++ +++ 72886 11 RRDAKTLDELFKDYGVRITTLAKMAEMGFTVQTLVNMTDQELEDVIKTMLEGYHVELLVGEKYGIKSAIRAERKHLEDDLERQ 93 456899**********************************************************************9954322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	6.9E-29	1	94	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
PPPPPPPPPR RRDAKTLDEL FKDYGVRITT LAKMAEMGFT VQTLVNMTDQ ELEDVIKTML 60 EGYHVELLVG EKYGIKSAIR AERKHLEDDL ERQKSSSKAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ude_A	1e-33	11	94	5	87	GINLFY PROTEIN
4ude_B	1e-33	11	94	5	87	GINLFY PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002966714.2	4e-64	floricaula/leafy-like protein FL1
Refseq	XP_002978027.1	5e-64	floricaula/leafy-like protein FL1
Swissprot	O04407	7e-34	NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBL	D8R4X5	9e-67	D8R4X5_SELML; Uncharacterized protein (Fragment)
TrEMBL	D8S420	1e-62	D8S420_SELML; Uncharacterized protein LEAFY
STRING	EFJ20684	2e-63	(Selaginella moellendorffii)
STRING	EFJ32742	1e-67	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP19266	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61850.1	2e-17	floral meristem identity control protein LEAFY (LFY)

Link Out ? help Back to Top
Phytozome	72886
Entrez Gene	9658140

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]